3.2.2 Salmonid Habitat Requirements

To maintain or restore habitat necessary for a sustainable salmon fishery requires that the biophysical processes producing properly functioning habitat be maintained or restored. However, since watersheds and streams differ in their characteristic flow, temperature, sedimentation, nutrient levels, physical structure, biological components, etc.; specific habitat requirements of salmonids differ among species and life-history types; and, these requirements change with season, life stage, and presence/absence of other biota; there is no simple definition of salmonid habitat requirements. Table 3-4 is an overview of the general major habitat requirements and habitat concerns during each life stage of the salmon’s life cycle. The goal of salmonid conservation should be to ensure that salmonid habitat requirements are met by maintaining habitat features within the natural range for the particular system. The range of patterns and processes which define the properly functioning habitat conditions within which salmon can exist and evolve are enumerated in the first three columns of Table 3-3 ("Habitat Objectives").

Table 3-3, modified from the 1996 NMFS "Matrix of Pathways and Indicators" for evaluating the effects of human activities on anadromous salmonid habitat, lists nine major habitat elements/pathways (column 1), indicators associated with habitat function (column 2), and general parameters or criteria for the proper functioning of each habitat indicator (column 3). The habitat elements include stream water quality, habitat access, stream habitat elements, channel conditions and dynamics, flow/hydrology, watershed conditions, estuarine conditions, and estuarine water quality. The ranges of criteria presented in this table are generally applicable, but are by no means absolute, since each watershed has a unique geomorphology, hydrology, etc. Therefore, target habitat conditions should be established on a regional watershed or site-specific basis as needed to account for ecological variability.

An extensive review of existing information on salmonid habitat requirements generated the data summarized in Tables 2-1, 2-2, and 2-3("Chinook, Coho, and Pink salmon habitat use by life history stage"), Table 3-4 ("Summary of Major Habitat Requirements and Concerns During Each Stage of the Salmon’s Life Cycle"), and Table 3-3 ("Habitat Objectives").

The information cited on salmonid life history, range of requirements, and types of adverse effects detailed in the tables are reconfirmed throughout the existing technical literature and appear to provide reliable descriptions of generalized baseline habitat.

TABLE 3-4. Summary of major habitat requirements and concerns during each stage of the salmon’s life cycle.

HABITAT REQUIREMENTS

 

HABITAT CONCERNS

Adult Migration Pathways

Adult salmon leave the ocean, enter fresh water, migrate upstream to spawn in the stream of their birth.

 

 

Passage blockage (e.g., culverts, dams)

Water quality (high temperatures, pollutants)

High flows/low flows/water diversions

Channel modification/simplification  

Reduced frequency of holding pools

Lack of cover, reduced depth of holding pools

Reduced cold-water refugia 

Increased predation resulting from habitat modifications 

Spawning and Incubation

Salmon lay their eggs in gravel or cobble nests called redds. To survive eggs (and the alevins that hatch and remain in the gravel) must receive sufficient water and oxygen flow within the gravel.

 

Availability of spawning gravel of suitable size

Siltation of spawning gravels

Redd scour caused by high flows

Redd de-watering

Temperature/water quality problems

Redd disturbance from trampling (human, animal).

Stream Rearing Habitat

Juvenile salmon may remain in fresh water streams over a year. They must find adequate food, shelter, and water quality conditions to survive, avoid predators, and grow. They must be able to migrate upstream and downstream within their stream and into the estuary to find these conditions and to escape high water or unfavorable temperature conditions.

 

Diminished pool frequency, area, or depth

Diminished channel complexity, cover

Temperature/water quality problems

Blockage of access to habitat (upstream or down)

Loss of off-channel areas, wetlands

Low water flows/high water flows

Predation caused by habitat simplification or loss of cover

Nutrient availability

Diminished prey/competition for prey

Smolt Migration Pathways

Smolts swim and drift through the streams and rivers, and must reach the estuary or ocean when there are adequate prey and water quality conditions and must find adequate cover to escape predators as they migrate.

 

 

Water quality

Low water flows/high water flows

Altered timing/quantity of water flows

Passage blockage/diversion away from stream

Increased predation resulting from habitat simplification or modification

Estuarine Habitat

Estuaries provide a protected and food-rich environment for juvenile salmon growth and allow the transition for both juveniles and adults between the fresh and salt water environments. Adults also may hold and feed in estuaries before beginning their upstream migration.

 

Water quality

Altered timing/quantity of fresh water in-flow

Loss of habitat resulting from diking dredging, filling

Diminished habitat complexity

Loss of channels, eel grass beds, woody debris

Increased predation resulting from habitat simplification

Diminished prey/competition for prey

Marine Habitat

The ocean environment provides the food resources necessary for development and growth. Juvenile salmon may depend on near shore rocks and kelp beds for food resources. Depending on species and stock, salmon may spend from one to five years growing in the ocean.

 

Water quality

Altered timing/quantity/composition of river water plumes

Diminished prey/competition for prey

Increased predation